Ok… here goes. This explanation is written like this- If they worked as they look, this is how it should work.
First- The power cells hold a certain amount of a radioactive element with the highest proton count, which I think is either Uranium or plutoium. The atoms go through the injectors into the Cyclotron. The Ion knob ionizes the atoms into protons, neutrons and electrons. They circle in paths because of set magnetic charges around the cycotron and synch. generator. The neutrons, being useless, are filtered out using, you guessed it, the N-Filter (gee, what could N stand for. I highly doubt it's neutron… hehe). the majority of the electrons go directly from the cyclotron to the PPD and on to the HGA, where compressed, cold hydrogen condenses the ions passing through to a visible beam. The protons pass from the cyclotron to the Synch. Gen. up to the vac. pump and gear box assembly where they get some of the extra Ions removed. From there the stream goes to the EDA and Booster, where some spare electrons are dissipated with static charges and the booster accelerates the beam. The Ion Arm is the final stage of filtering, where another ionization source splits and left full molecules and sends them down to the PPD where they follow the course of the electrons. The only problem I can't figure is how the beam goes from the HGA to the gun, aside of to through the beam line to a hidden pathway to the gun hose, possibly INSIDE the synch. gen. The gun is just a big gateway for the stream…
Now, the stream is this-
The orange center beam is the protons, the blow arcs are called electron arcs and the purple charges going in opposite direction of the stream are harmless electron charges in the beam and taken in from the atmosphere and the ghost.
I hope that this clarifies things and is remembered for time to come, because I don't want to write it again!!